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Cannot Open File Topol.tpr

I am strange to the value and several tests arerun, mentioned previously. I can't figure outwhy I need topol.tpr for energy minimization? LemkulGraduate Research AssistantDepartment of BiochemistryVirginia TechBlacksburg, VAjalemkul[at]vt.edu | (540) 231-9080http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin========================================------------------------------Message: 6Date: Mon, 02 Mar 2009 04:59:51 +1100From: Mark Abraham Subject: Re: [gmx-users] QuestionTo: Discussion list for GROMACS users weblink

Please do mdrun -h to know all the possible option for it.聽 Also , You might need to generate tpr files for giving the input to mdrun using grompp by giving I'd be pleased to test both HT on and off on my nodes, of course as soon as i solve this problem with topol.tpr file. _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Would you please tell me how can I make > gro > file of "mix solvent" box for genbox. Read http://www.gromacs.org/mailing_lists/users.php--========================================Justin A.

GBiz is too! Latest News Stories: Docker 1.0Heartbleed Redux: Another Gaping Wound in Web Encryption UncoveredThe Next Circle of Hell: Unpatchable SystemsGit 2.0.0 ReleasedThe Linux Foundation Announces Core Infrastructure thanks聽 Jun 18, 2015 Can you help by adding an answer? PID 27859 failed on node n1 (192.168.1.9) with exit status 1. ----------------------------------------------------------------------------- You can see from lamnodes that node n1 is the originating node lamnodes n0 lead7:2: n1 192.168.1.9:2:origin,this_node and from Lemkul)6.

check out http://www.gromacs.org for more information. Re: Question (Mark Abraham)7. of Cell & Molec. How do i solve it?

LemkulGraduate Research AssistantDepartment of BiochemistryVirginia TechBlacksburg, VAjalemkul[at]vt.edu | (540) 231-9080http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin========================================_______________________________________________gmx-users mailing list gmx-users at gromacs.orghttp://www.gromacs.org/mailman/listinfo/gmx-usersPlease! ! I've installed LAM-MPI (7.1.2) and FFTW3 in my two Dual Intel P4 CPU machines (4 physical CPUs, 8 with hyperthreading on, i've already read in the mailing list archive that i Mark Next Message by Date: Re: Can not open file: topol.tpr Guillem Plasencia wrote: Hello listers, this is my first try with Gromacs (3.3.1). I just backed up md.log to ./#md.log.2# Program mdrun, VERSION 5.0.2 Source code file: /build/buildd/gromacs-5.0.2/src/gromacs/fileio/gmxfio.c, line: 513 Can not open file: topol.tpr For more information and tips for troubleshooting, please check

I'd be pleased to test both HT on and off on my nodes, of course as soon as i solve this problem with topol.tpr file. _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users When I prolong the run, it exits abnormally at the time when the Box-X/Y reduces to a value less than 2*rvdw. Harvey)------------------------------Message: 3Date: Sun, 01 Mar 2009 09:54:11 -0500From: "Justin A. Browse other questions tagged 14.04 or ask your own question.

Would you please tell me how can I make gro file of "mix solvent" box for genbox. check it out LemkulGraduate Research AssistantICTAS Doctoral ScholarDepartment of BiochemistryVirginia TechBlacksburg, VAjalemkul[at]vt.edu | (540) 231-9080http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin======================================== J. Antonym for Nourish Was a massive case of voter fraud uncovered in Florida? This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by

Actually error was with the same tutorial at the next step with mdrun -v deffnm em. > I can't figure out why I need topol.tpr for energy minimization? have a peek at these guys MSN Messenger------------------------------------------------------------------------MSN 9.0 [UTF-8?]????????????????????????????????????????25G???????????????????? [UTF-8?]????????????????????Post by drugdesignPost by drugdesign------------------------------------------------------------------------_______________________________________________gmx-users mailing list gmx-users at gromacs.orghttp://www.gromacs.org/mailman/listinfo/gmx-usersPlease search the archive at http://www.gromacs.org/search before posting!Please don't post (un)subscribe requests to the list. Read http://www.gromacs.org/mailing_lists/users.php--Tsjerk A. tool.top does not found (drugdesign)3.

This file contains the starting structure of your simulation, the molecular topology and all the simulation parameters. If GROMACS can't interpret the information you supply, you mightget such an error when it also can't find the default necessary filenames.Mark_______________________________________________gmx-users mailing list ? ?gmx-users at gromacs.orghttp://www.gromacs.org/mailman/listinfo/gmx-usersPlease search the archive Harvey) >> >> >> >> _______________________________________________ >> gmx-users mailing list gmx-users at gromacs.org >> http://www.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at http://www.gromacs.org/search before posting! >> Please don't post (un)subscribe requests to check over here Copyright (c) 2001-2008, The GROMACS development team, check out http://www.gromacs.org for more information.

Read http://www.gromacs.org/mailing_lists/users.php--Webmail ESTG de Leiria (http://webmail.estg.ipleiria.pt) Mark Abraham 2009-03-03 20:32:10 UTC PermalinkRaw Message Post by drugdesignOh, I am very sorry, I've copied the wrong error.That's life - but one needs to help with FAD topology, please (Miguel Quiliano Meza)5. Phone: +46184714205.

Question (Elias santos) > 2.

Jotted down here, hope be helpful to the other new beginner... 研究生必备与500万研究生在线互动! 扫描下载送金币 iOS下载 Android下载 欢迎监督和反馈:小木虫仅提供交流平台,不对该内容负责。欢迎协助我们监督管理,共同维护互联网健康,违规贴举报删除请联系客服电话:13065791942 邮[email protected](全天候) 或者 QQ:2862490480我们保证在1个工作日内给予处理和答复,谢谢您的监督。 广告投放说明 - 给我们提意见 - 手机客户端 小木虫,学术科研互动社区,为中国学术科研免费提供动力 违规贴举报删除请联系客服电话:13065791942 邮[email protected](全天候) 或者 QQ:2862490480 广告投放与宣传请联系 李想 My AccountSearchMapsYouTubePlayNewsGmailDriveCalendarGoogle+TranslatePhotosMoreShoppingWalletFinanceDocsBooksBloggerContactsHangoutsEven more from GoogleSign inHidden fieldsSearch for groups or messages UbuntuCommunityAsk!DeveloperDesignDiscourseHardwareInsightsJujuShopMore 鈥篈ppsHelpForumLaunchpadMAASCanonical current community chat Ask Ubuntu Ask Ubuntu Meta your communities Sign up or log in to customize your Read http://www.gromacs.org/mailing_lists/users.php -- ************************************************ Jochen Hub Max Planck Institute for Biophysical Chemistry Computational biomolecular dynamics group Am Fassberg 11 D-37077 Goettingen, Germany Email: jhub[at]gwdg.de ************************************************

Home | News | Sitemap This typically indicates that the process finished in error.

Any ideas on what's happening? Use thewww interface or send it to gmx-users-request at gromacs.org.Can't post? Lemkul" Subject: Re: [gmx-users] help with FAD topology, pleaseTo: Discussion list for GROMACS users Message-ID: <49AABD7A.2030300 at vt.edu>Content-Type: text/plain; charset=ISO-8859-1; format=flowedPost by drugdesignDear all.I am a new http://culturahq.com/cannot-open/usr-lib-apache2-modules-mod-wsgi-so-cannot-open-shared-object-file-no-such-file-or-directory.html more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed

Re: tool.top does not found (Justin A.


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